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Software

Cell Illustrator - A Biopathway Modeling and Simulation Tool Update Link / Bad Link? 
Cell Illustrator aids researchers in modeling metabolic pathways, signal transduction cascades, gene regulatory pathways as well as dynamic interactions of various biological entities such as genomic DNA, mRNA and proteins.
Submitted Jan 10, 2005 by Manuela Müller
Rating: (2 Ratings)   Rate this link Total Visits: 11
 
Genamics Update Link / Bad Link? 
Powerful and Easy-to-Use Resources for Molecular Biology and Biochemistry. Host of the largest software and journals databases for software.
Submitted Sep 03, 2000
Updated Sep 16, 2000
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GenomeInspector Update Link / Bad Link? 
The program GenomeInspector is a tool to detect distance correlations between sequence elements (e.g. between open reading frames and transcription factor binding sites) on megabases of nucleotide sequences.
Submitted Sep 05, 2000
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GeneMark Update Link / Bad Link? 
A program for gene prediction in sequences.
Submitted Sep 05, 2000
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GeneQuiz Update Link / Bad Link? 
The GeneQuiz system provides highly automated analysis of biological sequences. Full use of GeneQuiz requires that you install certain other software at your site.
Submitted Oct 15, 2000
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Glimmer Update Link / Bad Link? 
Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea.
Submitted Sep 05, 2000
Updated Sep 15, 2000
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Glimmer Update Link / Bad Link? 
Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA.
Submitted Sep 15, 2000
Updated Sep 16, 2000
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MAGPIE Update Link / Bad Link? 
The MAGPIE system is designed to automatically monitor changing sequence data, generate requests to software tools, incorporate results into a growing knowledge base about the genome, and formulate reports on decisions and inferences about the genome.
Submitted Oct 24, 2000
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SE Search Server Update Link / Bad Link? 
tRNAscan-SE identifies transfer RNA genes in genomic DNA or RNA sequences.
Submitted Sep 19, 2000
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WebBLAST Update Link / Bad Link? 
NHGRI WebBLAST is a suite of software tools to aid in viewing and organizing genetic sequencing data.
Submitted Sep 30, 2000
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AceDB Update Link / Bad Link? 
Acedb is a genome database system developed since 1989 primarily by Jean Thierry-Mieg (CNRS, Montpellier) and Richard Durbin (Sanger Centre). It provides a custom database kernel, with a non-standard data model designed specifically for handling scientific data flexibly, and a graphical user interface with many specific displays and tools for genomic data. Acedb is used both for managing data within genome projects, and for making genomic data available to the wider scientific community.
Submitted Dec 21, 2000
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Ensembl Genome Server Update Link / Bad Link? 
Ensembl is a joint project between EMBL-EBI and the Sanger Centre to develop a software system which produces and maintains automatic annotation on eukaryotic genomes.
Submitted Sep 26, 2000
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Expression Profiler Update Link / Bad Link? 
Expression Profiler is a set of tools for the clustering, analysis and visualization of gene expression and sequence data.
Submitted Sep 26, 2000
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GAS2.0 Update Link / Bad Link? 
GAS is an integrated computer program designed to automate and accelerate the acquisition and analysis of genomic data.
Submitted Oct 20, 2000
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Gene Codes Corporation Update Link / Bad Link? 
An online site designed to give bioscientists rapid access to up-to-date versions of biomolecular and genetics software and databases.
Submitted Sep 03, 2000
Updated Sep 16, 2000
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GeneTree Update Link / Bad Link? 
GeneTree is an experimental program for comparing gene and species trees.
Submitted Sep 05, 2000
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InterPro Update Link / Bad Link? 
Integrated Resources of Proteins Domains and Functional Sites. InterPro is useful for whole genome analysis and has already been used for the proteome analysis of a number of completely sequenced organisms. A preliminary proteome analysis was also produced for the human genome.
Submitted Sep 19, 2000
Updated Sep 27, 2000
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Keygene products B.V. Update Link / Bad Link? 
Keygene products B.V. develops and supplies specialized products worldwide for research in genomics.
Submitted Sep 03, 2000
Updated Sep 16, 2000
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MBI Update Link / Bad Link? 
Developer and manufacturer of OLIGO Primer Analysis Software.
Submitted Sep 03, 2000
Updated Sep 16, 2000
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REPuter Update Link / Bad Link? 
The REPuter program family provides state of the art software solutions to compute and visualize repeats in whole genomes or chromosomes.
Submitted Dec 02, 2000
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SAGE Update Link / Bad Link? 
SAGE is a powerful tool that allows the analysis of overall gene expression patterns with digital analysis. Because SAGE does not require a preexisting clone, it can be used to identify and quantitate new genes as well as known genes. As detailed in the Findings and References page, SAGE has been instrumental in a variety of important discoveries.
Submitted Nov 19, 2000
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Textco, Inc. Update Link / Bad Link? 
Textco's Gene Construction Kit 2 is an unique DNA manipulation, cloning design, and illustration tool. GCK2 provides a way to manipulate DNA sequences with an intuitive graphical interface -- the way biologists think about and illustrate their cloning projects. The Gene Inspector 1.5 combines a sophisticated sequence analysis package with a scientific laboratory notebook. By combining analyses with a powerful notebook, Textco has provided the ability to keep related information in a single location for the first time. Analysis Setups provide a way to define an analysis (or multiple analyses) with all its parameters and to save it as a menu item for future use. This means that everyone in the group will be able to get consistent results.
Submitted Sep 20, 2000
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